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Basically place the following within the new page:
<BODY onLoad="setTimeout('window.close()',5000)">
where 5000 is 5 seconds.
If you don't have access to the new page to amend the body tag, then use the following:
<SCRIPT LANGUAGE="JavaScript"><!-- windowHandle = window.open('page.htm','windowName','width=400,height=400'); setTimeout('windowHandle.close()',5000); //--></SCRIPT>